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NeuroVLM
Installation
Tutorials
Quickstart
Tutorial 1: Introduction to NeuroVLM
Tutorial 2: Contrastive Retrieval
Tutorial 3: Generative Text-to-Brain
Tutorial 4: Generative brain-to-text with NeuroQFormer
Tutorial 5: Searching Your Own Corpus
Tutorial 6: Atlas-free 3D CNN inference
Mapping Brain Networks to Cognitive Atlas Concepts
Preprint Figure Reproduction
Experimental Notebooks
Integrated CNN and multimodal pipeline
Historical architecture exploration
Train the atlas-free CNN autoencoder
Train CNN contrastive and text-to-brain branches
Train CNN contrastive retrieval on PubMed
Autoencoder reconstruction comparison
Contrastive retrieval comparison
Text-to-brain generation comparison
API Documentation
neurovlm.core.NeuroVLM
neurovlm.core.BrainSearchResult
neurovlm.core.TextSearchResult
neurovlm.core.BrainTopKResult
neurovlm.core.runtime.load_pipeline
neurovlm.core.runtime.NeuroVLMRuntime
neurovlm.core.runtime.RuntimeMetadata
neurovlm.data.fetch_data
neurovlm.data.load_dataset
neurovlm.data.load_latent
neurovlm.data.load_masker
neurovlm.data.atlas_free_dataset.AtlasFreeCNNDataset
neurovlm.data.atlas_free_dataset.AtlasFreeCNNDataProvider
neurovlm.data.atlas_free_dataset.atlas_free_cnn_splits
neurovlm.models.NeuroAutoEncoder
neurovlm.models.ProjHead
neurovlm.models.Specter
neurovlm.models.load_model
neurovlm.models.registry.ModelFamily
neurovlm.models.registry.ModelTask
neurovlm.models.registry.ModelDomain
neurovlm.models.registry.ModelVariant
neurovlm.models.registry.ModelSpec
neurovlm.models.registry.resolve_model_spec
neurovlm.cnn.CNNContrastiveModel
neurovlm.cnn.CNNTextToBrainModel
neurovlm.cnn.atlas_free_volume_to_mlp_flat
neurovlm.cnn.mlp_flat_to_atlas_free_volume
neurovlm.models.losses.InfoNCELoss
neurovlm.models.losses.FocalLoss
neurovlm.models.losses.TruncatedLoss
neurovlm.training.AutoencoderTrainConfig
neurovlm.training.ContrastiveTrainConfig
neurovlm.training.TextToBrainTrainConfig
neurovlm.training.MLPAutoencoderTrainConfig
neurovlm.training.MLPContrastiveTrainConfig
neurovlm.training.MLPTextToBrainTrainConfig
neurovlm.training.MLPBrainToTextRetrievalTrainConfig
neurovlm.training.BrainToTextGenerationTrainConfig
neurovlm.training.train_autoencoder
neurovlm.training.train_contrastive
neurovlm.training.train_text_to_brain
neurovlm.training.train_mlp_autoencoder
neurovlm.training.train_mlp_contrastive
neurovlm.training.train_mlp_text_to_brain
neurovlm.training.train_mlp_brain_to_text_retrieval
neurovlm.training.train_brain_to_text_generation
neurovlm.evaluation.ComparisonSelection
neurovlm.evaluation.ComparisonResult
neurovlm.evaluation.default_comparison_matrix
neurovlm.evaluation.evaluate_reconstruction_comparison
neurovlm.evaluation.evaluate_contrastive_comparison
neurovlm.evaluation.evaluate_text_to_brain_comparison
neurovlm.metrics.recall_at_k
neurovlm.metrics.recall_curve
neurovlm.metrics.dice
neurovlm.metrics.dice_top_k
neurovlm.metrics.bernoulli_bce
neurovlm.metrics.bits_per_pixel
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